Analyzing RNA-seq data with DESeq2Updated 5 months ago

Michael I. Love, Simon Anders, and Wolfgang Huber

Rendered from DESeq2.Rmd in DESeq2 1.45.3.
Tximeta: transcript quantification import with automatic metadataUpdated 6 months ago

Michael I. Love, Charlotte Soneson, Peter F. Hickey, Rob Patro

Rendered from tximeta.Rmd in tximeta 1.23.2.
Introduction to bootRangesUpdated 1 years ago

Wancen Mu

Rendered from bootRanges.Rmd in nullranges 1.11.0.
Swish: differential expression accounting for inferential uncertaintyUpdated 1 years ago

Michael Love

Rendered from swish.Rmd in fishpond 2.11.0.
Matching case study I: CTCF occupancyUpdated 1 years ago

Eric S. Davis

Rendered from matching_granges.Rmd in nullranges 1.11.0.
Matching case study II: CTCF orientationUpdated 1 years ago

Eric S. Davis

Rendered from matching_ginteractions.Rmd in nullranges 1.11.0.
Introduction to matchRangesUpdated 1 years ago

Eric S. Davis

Rendered from matchRanges.Rmd in nullranges 1.11.0.
SEESAW - Allelic expression analysis with Salmon and SwishUpdated 1 years ago

Michael Love

Rendered from allelic.Rmd in fishpond 2.11.0.
Creating a pool set for matchRangesUpdated 2 years ago

Eric S. Davis

Rendered from matching_pool_set.Rmd in nullranges 1.11.0.
Introduction to nullrangesUpdated 2 years ago

Michael Love

Rendered from nullranges.Rmd in nullranges 1.11.0.
eds: Low-level reader function for Alevin EDS formatUpdated 2 years ago

Avi Srivastava

Rendered from eds.Rmd in eds 1.7.0.
Importing transcript abundance with tximportUpdated 3 years ago

Michael I. Love, Charlotte Soneson, Mark D. Robinson

Rendered from tximport.Rmd in tximport 1.33.0.
Getting started with the plyranges packageUpdated 3 years ago

Stuart Lee

Rendered from an-introduction.Rmd in plyranges 1.25.0.