No datasets match
  1. airway::airway
    Airway smooth muscle cells
    rda| rds
    RangedSummarizedExperiment
  2. airway::gse
    Airway smooth muscle cells - Salmon quantification
    rda| rds
    RangedSummarizedExperiment
  3. fission::fission
    Fission yeast time course
    rda| rds
    RangedSummarizedExperiment
  4. macrophage::gse
    Macrophage dataset - Salmon quantification
    rda| rds
    RangedSummarizedExperiment
  5. macrophage::macro_tx2gene
    Macrophage dataset - transcript-to-gene table
    rda| rds
    DFrame
  6. macrophage::macro_txp_se
    Macrophage dataset - transcript-level quantification with inferential replicates
    rda| rds
    RangedSummarizedExperiment
  7. nullrangesData::sc_promoter
    Chromium Single Cell Multiome ATAC + Gene Expression assay
    rda| rds
    GRanges
  8. nullrangesData::sc_rna
    Chromium Single Cell Multiome ATAC + Gene Expression assay
    rda| rds
    GRanges
  9. rnaseqDTU::cts
    Estimated Salmon counts (6 vs 6)
    csv| json| rda| rds
    matrix|78164 x 12
  10. rnaseqDTU::dge.genes
    Genes with differential gene expression
    json| rda| rds
    character
  11. rnaseqDTU::disps
    Transcript-level dispersion parameter
    json| rda| rds
    numeric
  12. rnaseqDTU::dte.genes
    Genes with differential transcript expression
    json| rda| rds
    character
  13. rnaseqDTU::dtu.genes
    Genes with differential transcript usage
    json| rda| rds
    character
  14. rnaseqDTU::dxr
    DEXSeq transcript-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20711 x 3
  15. rnaseqDTU::dxr.g
    DEXSeq gene-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7764 x 2
  16. rnaseqDTU::fold_changes
    Simulation fold changes
    csv| json| rda| rds
    matrix|47185 x 0
  17. rnaseqDTU::frag_GC_bias
    Fragment GC bias
    csv| json| rda| rds
    matrix|101 x 15
  18. rnaseqDTU::iso.dge
    Isoforms in the genes with DGE
    json| rda| rds
    logical
  19. rnaseqDTU::iso.dte
    Isoforms with DTE
    json| rda| rds
    logical
  20. rnaseqDTU::iso.dte.only
    Isoforms with DTE and not DTU
    json| rda| rds
    logical
  21. rnaseqDTU::iso.dtu
    Isoforms with DTU
    json| rda| rds
    logical
  22. rnaseqDTU::res
    DRIMSeq gene-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7764 x 5
  23. rnaseqDTU::res.txp
    DRIMSeq transcript-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20711 x 6
  24. rnaseqDTU::sim_counts
    Simulated counts for group 1
    json| rda| rds
    numeric
  25. rnaseqDTU::sim.counts.mat
    Simulated counts
    csv| json| rda| rds
    matrix|47185 x 0
  26. rnaseqDTU::tpms
    Simulated abundances
    csv| json| rda| rds
    matrix|203027 x 0
  27. rnaseqDTU::txdf
    Transcript-to-gene data.frame
    csv| xlsx| rda| rds
    data.frame|203027 x 3
  28. rnaseqDTU::txi.g
    Gene-level tximport object
    json| rda| rds
    list